1. paper01	Prof. Eugene Korotkov, katrin22@mtu-net.ru, Center of Bioengineering, Russian Academy of Sciences, Russian Federation, Moscow, prospect 60-tya Oktyabrya, 7/1, "Latent Periodicity of Protein Kinase Amino Acid Sequences"
2. paper02	Keala Chan, iploft@iploft.com, Fernandex & Associates, LLP, 1047 El Camino Real, Suite 201, Menlo Park, CA 94025, "Patent Prosecution in Proteomics"
3. paper03	Ravi Janardan, janardan@cs.umn.edu, Dept. of Computer Science & Engineering, University of Minnesota, 4-192 EE/CS Bldg, 200 Union St. SE, Minneapolis, MN 55455-0159, "Pairwise protein structure alignment based on an orientation-independent representation of the backbone geometry" 
4. paper04	Liu Quan, liuquan@cys.dq.cnpc.com.cn, Institute of Daqing Oil Production Technology, Daqing 163453, China, "An Algorithm Based on Equivalence Classes for Tableau with Equality"
5. paper05	Klaus Seidl, kse@gbf.de, German Research Center for Biotechnology, Research Group Bioinformatics, Mascheroder Web 1, 38124 Braunschweig, Germany, "System-Level Analysis by PheGe's Virtual Cell Studio"
6. paper06	Jesus S. Aguilar-Ruiz, aguilar@lsi.us.es, Department of Computer Science, University of Seville, Spain, "Knowledge Discovery Approaches to Gene Expression Data Interpretation"
7. paper07	Chin Wei Chuen, cweichue@dso.org.sg, DSO National Laboratories, 20 Science Park Drive, Singapore, 118230, "Coronary Artery Disease Prediction Using DNA Microarrays, Neural Networks and other Statistical Analysis Tools"
8. paper08	Zoe Lacroix, zoe.lacroix@asu.edu, Arizona State University, Mechanical and Aerospace Engineering, PO Box 876106, Tempe, AZ 85287-6106, "Integrating Biological Data and Tools with BIS"
9. paper09	Haifeng Liu, lhaifeng@dso.org.sg, IFL/DS, DSO National Laboratories, 20 Science Park Drive, Singapore 118230, "Identification of High-Polymorphic Dinucleotide Tandem Repeats Using a Machine Learning Approach"
10.  paper10	Wai Ming Kong, kong_wai_ming@nyp.gov.sg,  Bioinformatics Group, Nanyang Polytechnic, 180 Ang Mo Kio Ave 8, Singapore 589830, "Support Vector Machine Approach for Cancer Detection Using Amplified Fragment Length Polymorphism (AFLP) Screening Method"
11. paper11	Jihane Boulahia-Smirani, l.smirani@ttnet.tn, ENSI./LIA, Artificial Intelligence Group, Tunis, Tunisia, "A new neuro-symbolic hybrid system for rule extraction or rule refinement"
12. paper12	Zhirong Sun, sunzhr@mail.tsinghua.edu.cn, Department of Mathematical Science,Tsinghua University, Beijing 100084, Reople's Repbulic of China, "Residue-couple Model for Protein Subcellular Localization Prediction"
13. paper13	D. Scott Warren, dswarren@uncc.edu, Computer Science Department, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte, NC 28223, "Length-Independent, Signal Processing Features for Functional Classification and Prediction of Small Sequences of Lipase, Protease, and Isomerase"
14. paper14	H. C. (Paul) Lee, hclee@phy.ncu.edu.tw, Department of Physics and Department of Life Science, National Central University, Chungli, Taiwan 320, ROC, "Evidence for growth of microbial genomes by short segmental duplications"
15. paper15	Patrick Ma, cschma@compu.polyu.edu.hk, Department of Computing, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong SAR, China, "A genetic algorithm-based approach for clustering gene expression data"
16. paper16	Hiromi Nishida, hnishida@iam.u-tokyo.ac.jp, Institute of Molecular and Cellular Biosciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan, "LysY: the best marker of prokaryotic lysine biosynthesis through the aminoadipate pathway"
17. paper17	Andrew Jones, jonesa@dcs.gla.ac.uk, Department of Computing Science and the Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow, G12 SQQ, UK, "Towards a data standard for two-dimensional gel electrophoresis"
18. paper18	Huey-jenn Chiang, hjchiang@mail.ndhu.edu.tw, Department of Life Science & Institute of Biotechnology, National Dong Hwa University, 1, Section 2, Da-Hsueh Road, Shou-Feng, Haulien, Taiwan 97441 R.O.C., "Surveying Genome to Identify Origins of DNA Replication In Silico"
19. paper19	Tao Jiang, jiang@cs.ucr.edu, Department of Computer Science, University of California, Riverside, CA, "Clustering binary fingerprint vectors with missing values for DNA array data analysis"
20. paper20	Xue-wen Chen, xwchen@csun.edu, Department of Electrical and Computer Engineering, California State University, 18111 Nordhoff Street, Northridge, CA 91330, "Finding expressed genes using genetic algorithms and support vector machines"
21. paper21	Ashok K. Gupta, ashokgupta@hotmail.com, SIGCOM Co. HQ, 38 Charak Sadan, Vikaspuri, New Delhi, 110018, India, or in USA, 10 Wheeler Rd, Westboro, MA 01581, "Multidimensional Multichannel Multi-"Distinguish" Dynamic Map in Dynamic Nodal Media"
22. paper22	Shu-Yun Le, shuyun@ncifcrf.gov, Laboratory of Experimental and Computational Biology, NCI Center for Cancer Research, National Cancer Institute, NIH, Bldg 469, Room 151, Frederick, MD 21702, "Statistical Inference for Well-ordered Structures in Nucleotide Sequences"
23. paper23	Liaofu Luo, lfluo@mail.imu.edu.cn, Laboratory of Theoretical Biophysics, Faculty of Science and Technolgy, Inner Mongloia University, Hohhut, 010021 China, "Protein secondary structural type is correlated with codon translation efficiency and mRNA structure"
24. paper24	Daming Yao, dyao@uwaterloo.ca, School of Computer Science, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada, "PathwayFinder: Bridging the Way Towards Automatic Pathway Extraction"
25. paper25	Michail Ya. Eingorin, skit@unn.ac.ru, Nizhniy Novgorod State University, SRDE "SCIT", P.O. 35, Nizhni Novgorod - 136, Russia 603136, "To fundamental Bases of Discrete Molecular Biology"
26. paper26	Wei-Mou Zheng, zheng@itp.ac.cn, Institute of Theoretical Physics, Academia Sinica, Beijing 100080, China, "A flexible model for promoter motifs"
27. paper27	Simon M. Lin, lin00025@mc.duke.edu, Department of Biostatistics and Bioinformatics, Duke University Medical Center, DUMC, Box 3958, Durham, NC 27710, "Using Decision Trees and Support Vector Machines to Classify Genes by Names"
28. paper28	Wen-Juan Hou, wjhou@nlg.csie.ntu.edu.tw, Department of Computer Science and Information Engineering, National Taiwan University, No. 1, Roosevelt Road Section 4, Taipei, Taiwan 106, R.O.C., "A Collocation Method to Extract Biological Keywords and Its Application to Protein Name Recognition"
29. paper29	Holger Mauch, hmauch@hawaii.edu, University of Hawaii at Manoa, Dept. of Information and Computer Science, 1680 East-West Road, Honolulu, HI 96822, "Genetic Algorithm Approach for the Center Sequence Problem Arising in Post-transcriptional Gene Silencing"
30. paper30	Phil Bourne, bourne@sdsc.edu, Integrative Biosciences, San Diego Supercomputer Center MC 0505, National Partnership for Advanced Computational Infrastructure, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0505, "Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data"
31. paper31	Daniel Nocirici, Daniel.nicorici@tut.fi, Tampere International Center for Signal Processing, Tampere University of Technology, P.O. Box 553, FIN-33101 Tampere, Finland, "Divergence Measures for DNA Segmentation"
32. paper32	Bailin Hao, hao@itp.ac.cn, T-Life Research Center, Fudan University, Shanghai 200433, China, "Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance"
33. paper33	Chris Ding, chqding@lbl.gov, NERSC Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, "Minimum Redundancy Feature Selection for Microarray Gene Expression Data"
34. paper34	Moritz Maass, maass@informatik.tu-muenchen.de, Fakultaet fuer Informatik, Technische Universitaet Muenchen, Boltzmannstrasse 3, D-85748 Garching, Germany, "A Fast Algorithm for the Inexact Characteristic String Problem"
35. paper35	Yen-Wei Chu, ywchu@cis.nctu.edu.tw, Department of Computer and Information Science, National Chiao Tung University, Hsinchu, 300 Taiwan, "A Schema Finding Approach for the Regularity of Secondary Protein Structure"
36. paper36	Patrick Ruch, Patrick.ruch@dim.hcuge.ch, University Hospital of Geneva, CH-1211 Geneva 5, Switzerland, "Large Scale Biomedical Concept Mapping"
37. paper37	Nadia Pisanti, pisanti@di.unipi.it, Department of Computer Science, University of Pisa, Via Buonarroti8 2, 56127 Pisa, Italy, Paper withdrawn
38. paper38	Chia H. Yeh, chyeh@sipi.usc.edu, Department of Electrical-Systems Engineering, University of Southern California, Los Angeles, CA 90089, "Genomic DNA Sequence Visualization Through Pentahedron Walking"
39. paper39	G. Sampath, sampath@tcnj.edu, Department of Computer Science, The College of New Jersey, Ewing, NJ 08628, "A block coding method that leads to significantly lower entropy values for the proteins of Haemophilus Influenzae and its coding sections"
40. paper40	Ka Kit Leung, kkleung@cse.cuhk.edu.hk, Department of Biology, the Chinese University of Hong Kong, Shatin, Hong Kong SAR, China, "3.5 Degree Structure Modeling"
41. paper41	Kazuhiro Seki, kseki@indiana.edu, Laboratory of Applied Informatics Research, Indiana University, 1320 East Tenth Streeet, LI 011, Bloomington, IN 47405-3907, "A Probabilistic Model of Identifying Protein Names and their Name Boundaries"
42. paper42	Jack Min, jack@gene.concordia.ca, Centre for Structural and Functional Genomics, Concordia University, Montreal QC H3G 1M8 Canada, "TargetFinder and Annotator: A Simple Approach for Finding Full-length Target cDNAs and for Annotating EST Sequences"
43. paper43	Ravi Janardan, janardan@cs.umn.edu, Department of Coputer Science & Engineering, Uniersity of Minnesota, 4-192 EE/CS Bldg., 200 Union St. SE, Minneapolis, MN 55455-0159, "Approximate multiple protein structure alignment using the Sum-of-Pairs distance"
44. paper44	Suchendra M. Bhandarkar, suchi@cs.uga.edu, Department of Computer Science, The University of Georgia, Athens, GA 30602-7404, "A Parallel Evolutionary Method for Physical Mapping of Chromosomes"
45. paper45	Russell Schwartz, russells@andrew.cmu.edu, Carnegie Mellon University, Room MI-246B, 440 Fifth Avenue, Pittsburgh, PA 15213, "Haplotype Motifs: An Algorithmic Approach to Locating Evolutionarily Conserved Patterns in Haploid Sequences"
46. paper46	Jitender S. Deogun, deogun@cse.unl.edu, Department of Computer Science and Engineering, University of Nebraska - Lincoln, Lincoln, NE 68588-0115, "PLUMMER: An Almost Linear Approach to Multiple Whole Genome Alignment"
47. paper47	Tai Hsu, hsuta@cs.orst.edu, Department of Computer Science, Oregon State University, Corvallis, OR 97331, "Walking Tree Method for Biological Sequence Alignment"
48. paper48	Chia-Yu Yen, cyen@ouray.cudenver.edu,  Department of Computer Science and Engineering, University of Colorado at Denver, Denver, CO, "Identification of Contaminants in Proteomics Mass Spectrometry Data"
49. paper49	Wing-Kin Sung, ksung@comp.nus.edu.sg, Department of Computer Science, National University of Singapore, Singapore, "Fast and Accurate Probe Selection Algorithm for Large Genomes"
50. paper50	Chengpeng Bi, cbi@ucdavis.edu, UC Davis Genome Center,University of California, Davis, CA 95616, : "The Approximate Algorithm for Analysis of the Strand Separation Transition in Superhelical DNA Using Nearest Neighbor Energetics"
51. paper51	Alejandro Heredia-Langner, Alejandro.Heredia-Langner@pnl.gov, Statistical and Quantitative Sciences, Pacific Northwest National Laboratory, Richland, WA 99352, "A heuristic optimization framework for the construction of De Novo peptide sequences"
52. paper52	Kasemsant Kuphanumat, kasemsant@biotec.or.th, Advanced Visual and Intelligent Computing Research Center, Department of Mathematics, Faculty of Science, Chulalongkorn University, Bangkok 1003, Thailand, "Highly Accurate Protein Secondary Structure Prediction by Combination of nth-order Markov Transition Matrix and Support Vector Machine"
53. paper53	Vijay Narayanasamy, vnarayan@cs.iupui.edu, 723 W Michigan St. SL 280, Indiana University Purdue University Indianapolis, IN 46202, : "TransMiner: Mining Transitive Associations among Biological Objects from Medline"
54. paper54	Seiya Imoto, imoto@ims.u-tokyo.ac.jp, Human Genome Center, institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo, 108-8639, Japan, "Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks"
55. paper55	Peter Saffrey, p.saffrey@ucl.ac.uk, Departemtns of Mathematics, Physiology, Centre for Mathematics and Physics in the Life and Experimental Sciences, University College London, London, NW1 2HE, United Kingdom, "Model Orchestration: addressing the model management challenges of systems biology"
56. paper56	M. Levent Kurnaz, kurnaz@boun.edu.tr, Department of Physics, Bogazici University, Istanbul, Turkey, "A Computer-Based Model for the Regulation of Mitogen Activated Protein Kinase (MAPK) Activation"
57. paper57	Sung-Joon Park, park@es.dis.titech.ac.jp, Department of Computational Intelligence and Systems Science, Interdisciplinary Graduate School of  Science and Engineering, Tokyo Institute of Technology, R1-418, 4259 Nagatsuta, Midori-ku, Yokohama, 226-8502 Japan, "Protein structure comparison by local fragment posture and global atomic superposition"
58. paper58	Sven Rahmann, sven.rahmann@molgen.mpg.de, Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestrasse 63, D-14195 Berlin, Germany, "Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics"
59. paper59	Isil Akson, aksan@boun.edu.tr, Yeditepe University, Faculty of Pharmacy, 26 Agustos Yerlesimi, 81120, Kayisdagi, Istanbul, Turkey, "A computer model for the kinetics of chromatin modifications at the immediate early gene promoter - brief communication"
60. paper60	Uwe Radetzki, ur@iai.uni-bonn.de, Department of Computer Science III*, University of Bonn, Roemestrasse 164, d-53117 Bonn, Germany, "Mediator-based Interoperation in Computational Biology: A Characterization of the Mediator Concept"
61. paper61	Alfredo Ferro, ferro@dmi.unict.it, Dipartimento di Matematica e Informatica, Universita di Catania, Italy, "ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median Selection"
62. paper62	Monica Chagoyen, monica@cnb.uam.es, Biocomputing Unit, Centro Nacional de Biotenologia, Campus Universidad Autonoma, 28049 Madrid, Spain, "A Semantic Mediation Approach for Problems in Computational Molecular Biology"
63. paper63	M. Kurhekar, mkurhekar@in.ibm.com, IBM India Research Lab, IIT Delhi, New Delhi - 110016, India, "Towards Scoring Metabolic Pathways and Verifying Hypothesis using Microarray Data"
64. paper64	Mireille Regnier, mireille.regnier@inria.fr, INRIA Rocquencourt, Domaine de Voluceau B. P. 105, 78153 Le Chesnay, France, "The QuickScore Library"
65. paper65	Simone Bentolila, tolila@infobiogen.fr, IGM, University Marne le Vallee - Cite Descartes, 5 Bd Descartes, Champs sur Marne, 77454 Marne la Vellee Cedex 2, France, "Two operative concepts for the post-genomic era: the "memoire vive" of the cell and a molecular algebra"
66. paper66	Wojciech Szpankowski, spa@cs.purdue.edu, Department of Computer Science, Purdue University, W. Lafayette, IN 47907, "An Optimal DNA Segmentation Based on the MDL Principle"
67. paper67	Tomoyuki Yamada, yamada@gi.k.u-tokyo.ac.jp, Department of Complexity Science and Engineering, Faculty of Frontier Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan, "Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently"
68. paper68	Shoudan Liang, shoudan.liang@nasa.gov, NASA Advanced Supercomputing Division, M.S. 229-1, MASA Ames Research Center, Moffett Field, CA 94035, "cWINNOWER Algorithm for Finding Fuzzy DNA Motifs"
69. paper69	Conrad Shyu, tsemings@cs.uidaho.edu, Initiative for Bioinformatic s and Evolutionary Studies (IBEST), Department of Computer Science, University of Idaho, Moscow, ID 83844-1010, "Evolving Consensus Sequences with a Genetic Algorithm"
70. paper70	Kathleen Kaplan, Kaplan@scs.howard.edu, Department of Systems and Computer Science, Howard University, "Finding Reverse Substrings in DNA"
71. paper71	Robert Kincaid, Robert_Kincaid@agilent.com,  Agilent Laboratories, 3500 Deer Creek Road, Palo Alto, CA 94303, "VistaClara: A Visualization for Microarray Data Exploration"
72. paper72	Cun-Quan Zhang, cqzhang@math.wvu.edu, Department of Mathematics, PO Box 6310, West Virginia University, Morgantown, WV 26506, "Identifying regulatory signals in DNA-sequences with a non-statistical approximation approach"
73. paper73	Amar Mukherjee, amar@cs.ucf.edu, School of Engineering and Computer Science, University of Central Florida, Orlando, FL 32816, "Codon Optimization for DNA Vaccines and Gene Therapy Using Pattern Matching"
74. papter74	Tolga Can, tcan@cs.ucsb.edu, Department of Computer Science, University of California at Santa Barbara, Santa Barbara, CA 93106-5110, "CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological Features"
75. paper75	Omer Egecioglu, omer@cs.ucsb.edu, Department of Computer Science, University of California, Santa Barbara, Santa Barbara, CA 93106, "Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints"
76. paper76	Li Zhang, lizhang@cse.buffalo.edu, Department of Computer Science and Engineering, State University of New York at Buffalo, Buffalo, NY 14260, "Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data"
77. paper77	Christopher Landauer, cal@aero.org, Aerospace Integration Science Center, The Aerospace Corporation, Los Angeles, CA, "Flexible Integration for Physiological Models"
78. paper78	Michael Baudis, mbaudis@stanford.edu, Dept. of Pathology, Stanford University Medical Center, 300 Pasteur Drive, Lane L210, Stanford, CA 94305,  "A Missing Link - Molecular-Cytogenetic Data for Oncogenetic Data Mining"
79. paper79	Ronald Pearson, pearson@mail.dbi.tju.edu, Department of Pathology, Anatomy, and Cell Biology, Thomas Jefferson University, 1020 Locust St., Philadelphia, PA, "Method-related vs. Biological Variability in cDNA Microarrays"
80. paper80	Thorsteinn Rognvaldsson, denni@ide.hh.se, School of Information Science, Computer and Electrical Engineering, Halmstad University, Box 823, 301 18 Halmstad, Sweden, "No Algorithm Beats the Simple Perceptron on HIV Protease Function Prediction"
81. paper81	Jiawei Liu, jiawei@stat.psu.edu, Department of Statistics, Pen State University, University Park, PA 16802, "Robust Phylogenetic Tree Selection Based on Assessment of Model Building Errors"
82. paper82	Yves Kodratoff, yk@lri.fr, Equipe Inference et Apprentissage, Laboratoire de Recherche en Informatique, Universite de Paris XI, 91405 Orsay Cedex, France, "Extracting Information in Molecular Biology: Towards a Complete Chain of Tools"
83. paper83	Dennis L. Chao, dlchao@cs.unm.edu, Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, "Stochastic Stage-structured Modeling of the Adaptive Immune System"
84. paper84	Luke Sheneman, sheneman@cs.uidaho.edu, Initiative for Bioinformatics and Evolutionary Studies (IBEST), Department of Computer Science, University of Idaho, Moscow, ID 83844-1010, "Evolving guide Trees in Progressive Multiple Sequence Alignment"
85. paper85	Dan Kuyper, dan.kuyper@dtn.com, Department of Computer Science, 6001 Dodge Street, PKI 175A, Univesity of Nebraska at Omaha, Omaha, NE 68182-0116, "Sequence Identification Utilizing Curated Custom Databases"
86. paper86	Gregory Kucherov, gregory.kucherov@loria.fr, LORIA/INRIA, 615, rue du Jardin Botanique, B.P. 101, 54602 Villers-les-Nancy, France, "YASS: Similarity search in DNA sequences"
87. paper87	Hongfang Liu, hongfang.liu@dmi.columbia.edu, Department of Biomedical Informatics, Columbia University, New York, NY 10032, "Combination and Comparison of Methods for Identifying Informative Genes from Microarray Data"
88. paper88	Tamer Kahveci, tamer@cs.ucsb.edu, Department of Computer Science, University of California, Santa Barbara, CA 93106, "Towards Index-based Similarity Search for Protein Structure Databases"
89. paper89	Keum Joo Kim, keumjoo@cse.uconn.edu, Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, "Local Minima-Based Exploration for Off-Lattice Protein Folding"
90. paper90	Ming-Syan Chen, mschen@cc.ee.ntu.edu.tw, Department of Electrical Engineering and Computer Science, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan, "Using Discretization Techniques to Discover Gene Patterns for Diagnostics"
91. paper91	Jiangchang Ning, ning@dbi.udel.edu, Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, "Wavelet Analysis of Nucleotide Genomic Sequences"
92. paper92	Shih Chi Peng, shihchi@url.com.tw, Department of Computer Science, National Tsing Hua University, 101 Section 2 Kuang Fu Road, Hsinchu 30043, Taiwan, R.O.C., "Computer-Aided Engineering for Inference of Genetic Regulatory Networks Using Data from DNA Microarrays"
93. paper93	Dan Gusfield, Gusfield@cs.ucdavis.edu, Department of Computer Science, UC Davis, Davis, CA, "Efficient Reconstruction of Phylogenetic Networks (of SNPs) with Constrained Recombination"
94. paper94	Chris Bailey-Kellog, cbk@cs.purdue.edu, 250 N. Univ. St., West Lafayette, IN 47907,  "Assessment of uncertainty in protein backbone NMR assignments using Bayesian model averaging"
95. paper95	Ya Zhang, yzhang@ist.psu.edu, School of Information Sciences and Technology, The Pennsylvania State University, University Park, 16802, "Mining Motifs from Yeast Promoters Based on Instance Density"
96. paper96	Sohyoung Kim, skime@gmu.edu, School of Computational Sciences, George Mason University, MSN 4E3, 10900 University Drive, Manassas, VA 20110, "Inference of gene regulation network topology by perturbation analysis"
97. paper97	Giri Narasimhan, giri@cs.fiu.edu, School of Computer Science, Florida International University, Miami, FL 33199, "Probe Selection Problem: Structure and Algorithms"
98. paper98	Shih Chieh Su, shichis@usc.edu, University of Southern California, Signal and Image Processing Institute, 3740 McClintock Ave, EEB400, Los Angeles, CA 90089-2564, "Genomic Sequence Analysis Using Gap Sequences and Pattern Filtering"
99. paper99	Zan Huang, zhuang@eller.arizona.edu, Artificial Intelligence Lab, Department of Management Information Systems, The University of Arizona, Tucson, Arizona 85721, "Evaluating Two Approaches to extracting Gene Regulatory Networks: Bayesian Networks and Association Rule Mining"
100. paper 100	Alex Pothen, pothen@cs.odu.edu, Department of Computer Science, Old Dominion University, Norfolk, VA 23529, : "Computational Protein Biomarker Prediction: a Case Study for Prostate Cancer"
101. paper101	Xiaoying Dong, xiaoying_dong@emails.bjpu.edu.cn, Department of Electronic Engineering, Beijing University iof Technology, Bijing, 100022, China, "Discrete Wavelet Transform Based Feature Extraction for Tissue Classification Using Gene Expression Data"
102. paper102	Xin He, xhe2@cs.luc.edu, Department of Computer Science, Loyola University Chicago, 6525 N. Sheridan Rd, Chicago, IL 60626, "Identifying Conserved Gene Clusters in the Presence of Orthologous Groups"
103. paper103	Liming Cai, cai@cs.uga.edu, Department of Computer Science, The University of Georgia, Athens, GA 30602, "Memory-efficient pseudoknot prediction with stochastic grammar modeling"
104. paper104	Mingzhou Song, msong@cs.qc.edu, Department of Computer Science, Queens College, Flushing, NY 11367, "Estimate Recombination Rate Distribution by Optimal Quantization"
105. paper105	Xin Feng, fengx@marquette.edu, Department of Electrical and Computer Engineering, Marquette University, 1515W. Wisconsin Ave., Milwaukee, WI 53233, "Understanding Macrophage Signaling Pathways through DNA Microarray Data Using Hybrid Self-Organizing Map and Fuzzy Logic Data Mining Approach"
106. paper106	Mohammed J. Zaki, zaki@cs.rpi.edu, Computer Science Department, Rensselaer Polytechnic Institute, Troy, NY 12180, "A Novel Approach to Determine Normal Variation in Gene Expression Data"
107. paper107	Hyoung rae Kim, hokim@fit.edu, Department of Computer Sciences, Florida Institute of Technology, Melbourne, FL, "Identifying Variable Length Multi-pair Palindromic Patterns with Errors in a DNA Sequence"
108. paper108	Russ Altman, russ.altman@stanford.edu, Department of Genetics, Stanford Medical Infromatics, 251 Campus Drive, MS)B X-215, Stanford, CA 94305-5479, "A Personalized and Automated dbSNP Surveillance System"
109. paper109	Bhavani Raskutti, bhavani.raskutti@team.telstra.com, Telkstra, 770 Blackburn Road, Clayton ,Victoria, Australia, "Fringe SVM Settings and Aggressive Feature Reduction"
110. paper110	Alexandre Tchourbanov, achurbanov@mail.unomaha.edu, Department of Computer Science, College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE 68182-0116, "A New Approach for Gene Annotation Using Unambiguous Sequence Joint"
111. paper111	Reda Alhajj, alhajj@cpsc.ucalgary.ca, Department of Computer Science, University of Calgary, Calgary, Alberta, Canada, "Finding Differentially Expressed Genes: Pattern Generation using q-values"
112. paper112	Carl J. Schmidt, schmidtc@udel.edu, Department of Animal and Food Sciences, University of Delaware, Newark, DE 19717, "Signal Transduction: NLP Based Information Extraction Using a Multi-agent System"
113. paper113	Wen-Lian Hsu, hsu@iis.sinica.edu.tw, Institute of Information science, Academia Sinica, Taipei 115, Taiwan, "A New Similarity Measure among Protein Sequences"
114. paper114	N. L. Ho, hlco@csis.hku.hk, Department of Computer Science and Information Systems, The University of Hong Kong, Hong Kong, "Efficient Constrained Multiple Sequence Alignment with Performance Guarantee"
115. paper115	Ozgur Ozturk, ozturk@cis.ohio-state.edu, Ohio State University, Department of Computer and Information Science, Columbus, OH 43210, "CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity Queries"
116. paper116	Hirotoshi Taira, tiara@cslab.kecl.ntt.co.jp, NTT Communication Science Laboratories, 2-4, Hikaridai, Seika-cho, Soraku-gun, Kyoto 619-0237, Japan, "New Method for Predicting RNA Secondary Structure"
117. paper117	Juha Kesseli, kesseli@cs.tut.fi, Institute of Signal Processing, Tampere University of Technology, P.O. Box 553, 33101 Tampere, Finland, "Inference of BN and BDN Models of Genetic Networks Using Monotonous Time Transformations"
118. paper118	Yongxian Wang, yongxian_wang@yahoo.com, School of Computer, National University of Defense Technology, 410073 Changsha, China, "Protein Structure Prediction Using Hybrid Neural Network and Fuzzy Inference System"
119. paper119	Sorin Istrail, sorin.istrail@celera.com, Applied Biosystems, 45 West Gude Drive, Rockville, MD 20850, "Epitope prediction algorithms for peptide-based vaccine design"
120. paper120	Alexander Schliep, Alexander.schliep@molgen.mpg.de, Department of Computational Molecular Biology, Max Palnck Institute for Molecular Genetics, Ihnestrasse 63, D-14195, Berlin, Germany, "Group testing with DNA Chips: Generating Designs and Decoding Experiments"
121. paper121	Debasis Mitra, dmitra@cs.fit.edu, Florida Institute of Technology, Department of Computer Science, 150 West University Boulevard, Melbourne, FL 32901, "Digital Signal Processing in Protein Secondary Structure Prediction"
122. paper122	Giri Narasimhan, giri@cs.fiu.edu, School of Computer Science, Florida International University, University Park, Miami, FL 33199, "Degenerate Primer Design via Clustering"
123. paper123	Sibabrata Ray, sibu@cs.ua.edu, Department of Computer Science, The University of  Alabama, Tuscaloosa, AL 35487, "Optimal Bounds on Feasible DNA Computing"
124. paper124	Jacinto Davila, jacinto@ula.ve, Centro de Invetigacion y Proyectors en Simulacion y Modelos, Universidad de Los Andes, Merida, Venezuela, "BIOINFORMANTS: BIOLogical, INFORMAtional ageNTS on the Internet"
125. paper125	Bruce Randall Donald, brd@cs.dartmouth.edu, Sudikoff Laboratory, Dartmouth Computer Science Department, Hanover, NH 03755, "3D Structural Homology Detection via Unassigned Residual Dipolar Couplings"
126. paper126	Arul Siromoney, asiro@vsnl.com, School of Computer Science and Engineering, Anna University, Chennai - 600 025, India, : "The Variable Precision Rough Set Inductive Logic Programming Model and Predictive Toxicology"
127. paper127	Ananth Grama, ayg@cs.purdue.edu, Department of Computer Science, Purdue University, West Lafayette, IN 47907, "Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments"
128. paper128	Mihaela Zavolan, mihaela@genomes.rockefeller.edu, The Rockefeller University, New York, NY 10021, "SMASHing regulatory sites in DNA by human-mouse sequence comparisons"
129. paper129	Yunfeng Sha, shan@cs.dal.ca, Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, NX, Canada B3H 1W5, "Automating recognition of regions of intrinsically poor multiple alignment for phylogenetic analysis using machine learning"
130. paper130	Guohuo Lin, ghlin@cs.ualberta.ca, Protein Engineering Network Centers of Excellence, Department of Computer Science, University of Alberta, Edmonton, Alberta T5G 2E8, Canada, "Automated Protein NMR Resonance Assignments"
131. paper131	Paolo Frasconi, paolo@dsi.unifi.it, Department of Systems and Computer Science, Universita di Firenze, Via di S. Marta 3, 50139-I Firenze, Italy, "Disulfide Connectivity Prediction Recursive Neural Networks and Evolutionary Information"
132. paper132	Gustavo Stolovitzky, Gustavo@us.ibm.com, IBM Computational Biology Center, T.J. Watson Research Center, PO Box 218, Yorktown Heights, NY 10598, "Can we identify  Cellular Pathways Implicated in Cancer using Gene Expression Data?"
133. paper133	Bahram Tafaghodinia, tafaghodi@irost.org, Applied Entomology Department, Iranian Research Organization of Science & Technology, PO Box 115814-3538, Tehran, Iran, "Engineering-Based Computer Simulation for Modeling Greenhouse Whitefly Population Growth"
134. paper134	Matthias Hoechsmann, International Graduate School in Bioinformatics and Genome Research, Universitaet Bielefeld, Postfach 100 131, D033501 Bielefeld, Germany, "Local Similarity in RNA Secondary Structures"
135. paper135	Gautam B. Singh, singh@oakland.edu, Laboratory of Advanced Software and Information Engineering, Oakland University, Rochester, MI, "High Sensitivity Data Mining from Biological Databases: Non-Homology Based Sequence Retrieval"
136. paper136	Eric P. Xing, epxing@cs.berkeley.edu, Computer Science Division, University of California, Berkeley, CA 94720, "A modular Bayesian model for de novo motif detection"
137. paper137	Nagiza F. Samatova, samaovan@ornl.gov, Computational Biology Group, Computer Science and Mathematics Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ride, TN 37830, "PICUPP: Protein Interaction Classification by Unlikely Profile Pair"
138. paper138	Nagiza F. Samatova, samaovan@ornl.gov, Computational Biology Group, Computer Science and Mathematics Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ride, TN 37830, "An SVM-based algorithm for identification of photosynthesis-specific genome features"
139. paper139	Donald Hamelberg, don@lac.uic.edu, Laboratory for Advanced Computing, Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, "Experimental Studies of the Universal Chemical Key (UCK) Algorithm on the NCI Database of Chemical Compounds"
140. paper140	Tanveer Syeda-Mahmood, IBM Almaden Research Center, 650 Harry Road, San Jose, CA 95120, "Clustering Time-varying Gene Expression Profiles using Scale-space Signals"
141. papaer141	Paul Munro, pmunro@mail.sis.pitt.edu, School of Information Sciences, Zunviersity of Pittsburgh, Pittsburgh, PA 15260, "A Dual Neural Network for Treatment Recommendations"
142. paper141	Srikanta J. Bedathur, srikanta@dsl.serc.iisc.ernet.in, Database Systems Lab, SERC, Indian Institute of Science, Bangalore, 560012, India, "Impact of Buffering on Persistent Suffix Tree Construction"
143. paper143	Wei Wang, Weiwang@cs.unc.edu, Computer Science Department, University of North Carolina, Chapel Hill, NC 27599, "Tendency based Subspace Clustering on Gene Expression Data"
144. paper144	Wei Wang, weiwang@cs.unc.edu, Computer Science Department, University of North Carolina, Chapel Hill, NC 27599, "Discovering Compact and Highly Discriminative Features or Feature Combinations of Drug Activities Using Support Vector Machine"
145. paper145	Wei Wang, weiwang@cs.unc.edu, Computer Science Department, University of North Carolina, Chapel Hill, NC 27599, "Reconstruction of Ancestral Gene Order Following Large Scale Genome Duplication and Gene Loss"
146. paper146	Don Adjeroh, don@csee.wvu.edu, Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, "The SCP and Compressed Domain Analysis of Biological Sequences"
147. paper147	Jake Y. Chen, jchen@myriad-proteomics.com, Myriad Proteomics, Inc., 2150 W. Dauntless Ave., Salt Lake City, UT 84116, "Initial Large-scale Exploration of Protein-protein Interactions in the Human Brain"
148. paper148	Marvin Frazier, US Department of Engery, Office of Science, Office of Biological and Environmental Reaseach, "Stepping Up Pace of Discovery: The Genomes to Life Program"
149. paper149	Sarafim Batzoglou, Department of Computer Science, Stanford University, Stanford, CA 94305-9010, "Discovering biological processes from microarray data using independent component analysis"
150. paper150	Gabriele witterstein, gw@appl-math.tu-muenchen.de, "A Space Efficient Persistent Implementation of an Index for DNA Sequences"
151. paper151	Peter Hammer, hammer@rutcor.rutgers.edu, Rutgers University's Center for Operations Research, Piscataway, NJ 08854, : "Combinatorial Analysis of Breast Cancer Data from Gene Expresion Microarrays"